National Institute of Plant Genome Research
Digital India     
 
    Dr. Swarup K. Parida
    Staff Scientist IV
    Ph.D. (Biotechnology), Jamia Hamdard University, New Delhi
    Post Doctoral Fellow, National Research Centre on Plant Biotechnology (NRCPB), New Delhi
    Tel. No.: 91-11-26741612, 14, 17 (Ext. 228)
    Direct: 91-11-26735228
    Fax: 91-11-26741658
    E-mail: swarup@nipgr.ac.in, swarupdbt@gmail.com
 Career
Staff Scientist II, National Institute of Plant Genome Research (NIPGR), New Delhi (2011 onwards)
Post Doctoral Fellow, National Research Centre on Plant Biotechnology (NRCPB), New Delhi (2010-11)
Ph.D. (Biotechnology), Jamia Hamdard University, New Delhi (2006-10)
Senior Research Fellow, National Research Centre on Plant Biotechnology (NRCPB), New Delhi (2004-09)
M.Sc. (Agricultural Biotechnology), Indira Gandhi Agricultural University (IGAU), Raipur, Chhattisgarh (2001-03)
B.Sc. (Agriculture), Orissa University of Agriculture and Technology (OUAT), Bhubaneswar, Orissa (1997-2001)
 Awards, Honours and Fellowships
Fellow,  National Academy of Agricultural Sciences (NAAS), India - 2019
Fellow, The National Academy of Sciences, India (NASI) - 2018
The National Academy of Sciences, India (NASI) Prof. B.K. Bachhawat Memorial Young Scientist Lecture Award (2018)
Member to the Crop Science Society of America (2016 onwards)
Member of Indian Science Congress Association (ISCA)
Member of Indian Society for Plant Biochemistry and Biotechnology
Member of Indian Society of Genetics and Plant Breeding
Associate Fellow of the National Academy of Agricultural Sciences (NAAS), New Delhi (2016 onwards)
NASI-Scopus Young Scientist Award 2015 in 'Agriculture'
Indian Genetics Congress (IGC) Young Scientist Researcher Award-2015
The Indian Science Congress Association (ISCA) Pran Vohra Award - (2014-15)
Associate Editor: Plant Molecular Biology Reporter (2014 onwards)
National Academy of Agricultural Sciences (NAAS) Young Scientist Award in Plant Improvement- 2013-14
Editor (Plant Biology): Nature Scientific Reports (2014 onwards)
Associate Editor (Plant Genomics): BMC Genomics (2014 onwards)
Academic Editor: PLOS ONE (2014 onwards)
Review Editor (Plant Genetics and Genomics): Frontiers in Plant Science (2014 onward)
Selected member to the Genetics Society of UK (2014 onwards)
Indian Council of Agricultural Research (ICAR) Jawaharlal Nehru Award in Plant Biotechnology-2011
National Academy of Sciences India (NASI) Young Scientist Platinum Jubilee Award-2011
Indian National Science Academy (INSA) Young Scientist Award - (2010)
Junior and Senior Research Fellowship from CSIR - (2003-04)
CEEB-JNU Fellowship from DBT during M.Sc. (Agricultural Biotechnology) - (2001-03)
OUAT Merit Scholarship from Govt. of Orissa during B.Sc. (Agriculture) - (1997-2001)
NRTS Merit Scholarship from Govt. of India - (1992-96)
 Research Area
Plant Molecular Genetics and Genomics
 Research Interest
Genomics of Seed and Pod Traits in Chickpea
The pod (fruit) and seed are the defining characteristics of chickpea and most importantly have high economic value as human diet. The seed and pod characters are also major yield contributing traits of chickpea and vary widely among cultivated desi and kabuli types, landraces and wild species accessions. Narrow genetic base and lack of requisite genetic variation in the cultivated chickpea species is the major limiting factor for the identification and fine mapping of genes for the traits contributing to higher pod and seed yield in chickpea. Molecular analysis and characterization of available diverse genetic resources of chickpea with considerable trait variation for seed and pod characteristics using new generation genomics tools and modern bioinformatics approaches could accelerate the discovery of sufficient numbers of informative genetic markers like single nucleotide polymorphisms (SNPs) and useful novel alleles in target genes and their regulatory sequences. Further, association of these candidate gene based genotypic information with the phenotypic information of specific seed and pod traits of the contrasting types would be an attractive solution for identification of genes and alleles for traits contributing to higher seed and pod yield in chickpea. Besides, validation of such genes and alleles identified by genetic association analysis in bi-parental mapping population and in different developmental stages of pod and seed of contrasting chickpea germplasm lines through expression profiling and functional analysis would enable identification of novel functionally relevant genes and alleles for major pod and seed traits and understanding their transcriptional regulation during developmental process of seed and pod formation in chickpea and other multi-seeded/podded legume species like Vigna. Keeping the above in view, the research work will be undertaken for (1) identification of genes and novel alleles for traits contributing to higher seed and pod yield in chickpea through candidate gene based association analysis and gene expression profiling, (2) functional validation of the identified genes/alleles in transgenic systems, and (3) combination and use of the identified genes/alleles in genetic enhancement of target species.
 Group Members
 Publications
Corresponding Author
Narnoliya L, Basu U, Bajaj D, Malik N, Thakro V, Daware A, Sharma A, Tripathi  S, Hegde VS, Upadhyaya HD, Singh AK, Tyagi AK, Parida SK (2019) Transcriptional signatures modulating shoot apical meristem morphometric and plant architectural  traits enhance yield and productivity in chickpea. Plant Journal 98:864-883.
Basu U, Upadhyaya HD, Srivastava R, Daware A, Malik N, Sharma A, Bajaj D, Narnoliya L, Thakro V, Kujur A, Tripathi S, Bharadwaj C, Hegde VS, Pandey AK, Singh AK, Tyagi AK, Parida SK (2019) ABC transporter-mediated transport of glutathione conjugates enhances seed yield and quality in chickpea. Plant Physiology 180:253-275.
Basu U, Narnoliya L, Srivastava R, Sharma A, Bajaj D, Daware A, Thakro V, Malik N, Upadhyaya HD, Tripathi S, Hegde VS, Tyagi AK, Parida SK (2019) CLAVATA signaling pathway genes modulating flowering time and flower number in chickpea. Theoretical and Applied Genetics 132:2017-2038.
Basu U, Bajaj D, Sharma A, Malik N, Daware A, Narnoliya L, Thakro V, Upadhyaya HD, Kumar R, Tripathi S, Bharadwaj C, Tyagi AK, Parida SK (2019) Genetic dissection of photosynthetic efficiency traits for enhancing seed yield in chickpea. Plant, Cell & Environment 42:158-173.
Sharma A, Basu U, Malik N, Daware A, Thakro V, Narnoliya L, Bajaj D, Tripathi S, Hegde VS, Upadhyaya HD, Singh AK, Tyagi AK, Parida SK (2019) Genome-wide cis-regulatory signatures for modulation of agronomic traits as exemplified by drought yield index (DYI) in chickpea. Functional Integrative Genomics DOI:10.1007/s10142-019-00691-2.
Basu U, Srivastava R, Bajaj D, Thakro V, Daware A, Malik N, Upadhyaya HD, Parida SK (2018) Genome-wide generation and genotyping of informative SNPs to scan molecular signatures for seed yield in chickpea. Scientific Reports 8:13240.
Dwivedi V, Parida SK, Chattopadhyay D (2017) A repeat length variation in myo-inositol monophosphate gene contributes to seed size trait in chickpea. Scientific Reports 7:4764.
Srivastava R, Upadhyaya HD, Kumar R, Daware A, Basu U, Shimray PW, Tripathi S,Bharadwaj C, Tyagi AK, Parida SK (2017) A Multiple QTL-Seq strategy delineates potential genomic loci governing flowering time in chickpea. Frontiers in Plant Science 8:1105.
Daware AV, Srivastava R, Singh AK, Parida SK, Tyagi AK (2017) Regional association analysis of metaQTLs delineates candidate grain size genes in rice. Frontiers in Plant Science 8:807.
Upadhyaya HD, Bajaj D, Tripathi S, Bharadwaj C, Tyagi AK, Parida SK (2017) Genetic dissection of plant growth habit in chickpea. Functional & Integrative Genomics 17:711-723.
Parida SK, Srivastava R, Bajaj D (2017) A genome-wide mQTL-seq scan identifies potential molecular signatures regulating plant height in chickpea. Plant Molecular Biology Reporter 35:273-286.
Shimray PW, Bajaj D, Srivastava R, Daware A, Upadhyaya HD, Kumar R, Bharadwaj C, Tyagi AK, Parida SK (2017) Identifying transcription factor genes associated with yield traits in chickpea. Plant Molecular Biology Reporter 35:562-574
Kujur A, Upadhyaya HD, Bajaj D, Gowda CL, Sharma S, Tyagi AK, Parida SK (2016) Identification of candidate genes and natural allelic variants for QTLs governing plant height in chickpea. Scientific Reports 6:27968.
Srivastava R, Bajaj D, Malik A, Singh M, Parida SK (2016) Transcriptome landscape of perennial wild Cicer microphyllum uncovers functionally relevant molecular tags regulating agronomic traits in chickpea. Scientific Reports 6:33616.
Upadhyaya HD, Bajaj D, Das S, Kumar V, Gowda CLL, Sharma S, Tyagi AK, Parida SK (2016) Genetic dissection of seed-iron and zinc concentrations in chickpea. Scientific Reports 6:24050. 
Badoni S, Das S, Sayal SYK, Gopalakrishnan S, Singh AK, Rao AR, Agarwal P, Parida SK, Tyagi AK (2016) Genome-wide generation and use of informative intron-spanning and intron-length polymorphism markers for high-throughput genetic analysis in rice. Scientific Reports 6:23765.
Das S, Singh M, Srivastava R, Bajaj D, Saxena MS, Rana JC, Bansal KC, Tyagi AK, Parida SK (2016) mQTL-seq delineates functionally relevant candidate gene harbouring a major QTL regulating pod number in chickpea. DNA Research 23:53-65.
Daware A, Das S, Srivastava R, Badoni S, Singh AK, Agarwal P, Parida SK, Tyagi AK (2016) An efficient strategy combining SSR markers-and advanced QTL-seq-driven QTL mapping unravels candidate genes regulating grain weight in rice. Frontiers in Plant Science 7: 1535.
Srivastava R, Singh M, Bajaj D, Parida SK (2016) A high-resolution InDel (Insertion-Deletion) markers-anchored consensus genetic map identifies major QTLs governing pod number and seed yield in chickpea. Frontiers in Plant Science 7:1362.
Upadhyaya HD, Bajaj D, Narnoliya L, Das S, Kumar V, Gowda CLL, Sharma S, Tyagi AK,  Parida SK (2016) Genome-Wide Scans for Delineation of Candidate Genes Regulating Seed-Protein Content in Chickpea. Frontier in Plant Science 7:302.
Bajaj D, Srivastava R, Tripathi S, Bharadwaj C, Upadhyaya HD, Tyagi AK, Parida SK (2016) EcoTILLING-based association mapping efficiently delineates functionally relevant natural allelic variants of candidate genes governing agronomic traits in chickpea. Frontiers in Plant Science 7:450. 
Bajaj D, Upadhyaya HD, Das S, Kumar V, Gowda CL, Sharma S, Tyagi AK, Parida SK (2016) Identification of candidate genes for dissecting complex branch number trait in chickpea. Plant Science 245:61-70.
Srivastava R, Bajaj D, Sayal YK, Meher PK, Upadhyaya HD, Kumar R, Tripathi S, Bharadwaj C, Rao AR, Parida SK (2016) Genome-wide development and deployment of informative intron-spanning and intron-length polymorphism markers for genomics-assisted breeding applications in chickpea. Plant Science 252:374-387.
Das S, Bajaj D, Krishnan SG, Singh AK, Parida SK (2016) Revisiting the decoded genomes to promptly reveal their genomic perspectives. Current Science 112:279-294.
Bajaj D, Saxena MS, Kujur A, Das S, Badoni S, Tripathi S, Upadhyaya HD, Gowda CLL, Sharma S, Singh S, Tyagi AK, Parida SK (2015) Genome-wide conserved non-coding microsatellite (CNMS) marker-based integrative genetical genomics for quantitative dissection of seed weight in chickpea. Journal of Experimental Botany 66:1271-1290
Das S, Upadhyaya HD, Srivastava R, Bajaj D, Gowda CLL, Sharma S, Singh S, Tyagi AK, Parida SK (2015) Genome-wide insertion-deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea. DNA Research 22:377-386.
Das S, Upadhyaya HD, Bajaj D, Kujur A, Badoni S, Laxmi, Kumar V, Tripathi S,  Gowda CLL, Sharma S, Singh S, Tyagi AK, Parida SK (2015) Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea. DNA Research22:193-203.
Bajaj D, Upadhyaya H, Khan Y, Das S, Badoni S, Shree T, Kumar V, Tripathi S, Gowda CLL, Singh S, Sharma S, Tyagi AK, Chattopadhyay D, Parida SK (2015) A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea. Scientific Reports 5:9264.
Kujur A, Upadhyaya HD, Shree T, Bajaj D, Das S, Saxena M, Badoni S, Kumar V, Tripathi S, Gowda CLL, Sharma S, Singh S, Tyagi AK, Parida SK (2015) Ultra-high density intra-specific genetic linkage maps accelerate identification of functionally relevant molecular tags governing important agronomic traits in chickpea. Scientific Reports 5:9468.
Kujur A, Bajaj D, Upadhyaya HD, Das S, Ranjan R, Shree T, Saxena MS, Badoni S, Kumar V, Tripathi S, Gowda CLL, Sharma S, Singh S, Tyagi AK, Parida SK (2015) A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea. Scientific Reports 5:11166.
Bajaj D, Das S, Badoni S, Kumar V, Singh M, Bansal KC, Tyagi AK,  Parida SK (2015) Genome-wide high-throughput SNP discovery and genotyping for understanding natural (functional) allelic diversity and domestication patterns in wild chickpea. Scientific Reports 5:11627.
Bajaj D, Das S, Upadhyaya HD, Ranjan R, Badoni S, Kumar V, Tripathi S, Gowda CLL, Sharma S, Singh S, Tyagi AK, Parida SK (2015) A genome-wide combinatorial strategy dissects complex genetic architecture of seed coat color in chickpea. Frontiers in Plant Science 6:979.
Kujur A, Bajaj D, Saxena MS, Upadhyaya HD, Das S, Ranjan R, Shree T, Saxena MS, Badoni S, Kumar V, Tripathi S, Gowda CLL, Sharma S, Singh S, Tyagi AK, Jain M, Parida SK (2015) Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea. Frontiers in Plant Science 6:162.
Upadhyaya HD, Bajaj D, Das S, Saxena MS, Badoni S, Kumar V, Tripathi S, Sharma S, Tyagi AK, Parida SK (2015) A genome-scale integrated approach aids in genetic dissection of complex flowering time trait in chickpea. Plant Molecular Biology 89:403-420.
Bajaj D, Das S, Parida SK (2015) CNMS: The preferred genic markers for comparative genomic, molecular phylogenetic, functional genetic diversity and differential gene regulatory expression analyses in chickpea. Journal of Biosciences40:579-592
Saxena MS, Bajaj D, Das S, Kujur A, Kumar V, Singh M, Bansal KC, Tyagi AK, Parida SK (2014) An integrated genomic approach for rapid delineation of candidate genes regulating agro-morphological traits in chickpea. DNA Research 21:695-710.
Saxena MS, Bajaj D, Kujur A, Das S, Badoni S, Kumar V, Singh M, Bansal KC, Tyagi AK, Parida SK (2014) Natural allelic diversity, genetic structure and linkage disequilibrium pattern in wild chickpea. PLOS ONE 9:e107484.
Kujur A, Bajaj D, Saxena MS, Tripathi S, Upadhyaya HD, Gowda CLL, Singh S, Tyagi AK, Jain M, Parida SK (2014) An efficient and cost-effective approach for genic microsatellite marker-based large-scale trait association mapping: identification of candidate genes for seed weight in chickpea. Molecular Breeding32:241-265.
Kujur A, Bajaj D, Saxena MS, Tripathi S, Upadhyaya HD, Gowda CLL, Singh S, Jain M, Tyagi AK, Parida SK (2013) Functionally relevant microsatellite markers from chickpea transcription factor genes for efficient genotyping applications and trait association mapping. DNA Research 20:355-374.
First Author
Agarwal P, Parida SK, Raghuvanshi S, Kapoor S, Khurana P, Khurana JP, Tyagi AK (2016) Rice improvement through genome-based functional analysis and molecular breeding in India. Rice 9:1 (As Joint First Author)
Parida SK, Kalia S, Pandit A, Nayak P, Singh RK, Gaikwad K, Srivastava PS, Singh NK, Mohapatra T (2016) Single nucleotide polymorphism in sugar pathway and disease resistance genes in sugarcane. Plant Cell Reports 35:1629-1653.
Parida SK, Verma M, Yadav SK, Ambawat S, Das S, Garg R, Jain M (2015) Development of genome-wide informative simple sequence repeat markers for large-scale genotyping applications in chickpea and development of web resource. Frontiers in Plant Science 6:645.
Parida SK, Mukerji M, Singh AK, Singh NK, Mohapatra T (2012) SNPs in stress responsive rice genes: validation and genotyping using Illumina GoldenGate assay. BMC Genomics 13:426.
Parida SK, Pandit A, Gaikwad K, Sharma TR, Srivastava PS, Singh NK, Mohapatra T (2010). Functionally relevant microsatellites in sugarcane unigenes. BMC Plant Biology 10:251.
Ngangkham Umakanta, Parida SK, Dey SK, Raj Kumar KA, Singh AK, Singh NK, Mohapatra T (2010). Genic markers for WA cytoplasm based male sterility and its fertility restoration in rice. Molecular Breeding 26:275-292 (As Joint First Author).
Parida SK, Yadava DK, Mohapatra T (2010). Microsatellites in Brassica unigenes: Relative abundance, marker design and use in comparative physical mapping and genome analysis. Genome53:55-67.
Parida SK, Dalal V, Singh NK, Mohapatra T (2009) Genic non-coding microsatellites in the rice genome: characterization, marker design and use in assessing genetic and evolutionary relationships among domesticated groups. BMC Genomics10:140.
Parida SK, Kalia SK, Kaul S, Dalal V, Hemaprabha G, Selvi A, Pandit A, Singh A, Gaikwad K, Sharma TR, Srivastava PS, Singh NK, Mohapatra T (2009) Informative genomic microsatellite markers for efficient genotyping applications in sugarcane. Theoretical and Applied Genetics118:327-338.
Parida SK, Raj Kumar KA, Dalal V, Singh NK, Mohapatra T (2006) Unigene derived microsatellite markers for the cereal genomes. Theoretical and Applied Genetics 112:808-817.
Co-authors
Pandey S, Kumari A, Shree M, Kumar V, Singh P, Bharadwaj C, Loake GJ, Parida SK, Masakapalli SK, Gupta KJ (2019) Nitric oxide accelerates germination via the mregulation of respiration in chickpea. Journal of Experimental Botany DOI:10.1093/jxb/erz185.
Jha UC, Bohra A, Jha R, Parida SK (2019) Salinity stress response and 'omics' approaches for improving salinity stress tolerance in major grain legumes. Plant Cell Reports 38:255-277.
Ngangkham U, Parida SK, Singh AK, Mohapatra T (2019) Differential RNA editing of mitochondrial genes in WA-Cytoplasmic based male sterile line Pusa6A, its maintainer and restorer lines of rice hybrids. Rice Science 4:26.
Jha UC, Bohra A, Nayyar H, Rani A, Devi P, Saabale PR, Parida SK (2019) Breeding and Genomics Approaches for Improving Productivity Gains in Chickpea Under Changing Climate.  In: Kole C. (eds) Genomic Designing of Climate-Smart Pulse Crops. Springer, Cham, pp-135-164.
Kumar K, Purayannur S, Kaladhar VC, Parida SK and Verma PK (2018) mQTL-seq and classical mapping implicates the role of an AT-HOOK MOTIF CONTAINING NUCLEAR LOCALIZED (AHL) family gene in Ascochyta blight resistance of chickpea. Plant Cell & Environment 41:2128-2140.
Jha UC, Jha R, Bohra A, Parida SK, Kole PC, Thakro V, Singh D and Singh NP (2018) Population structure and association analysis of heat stress relevant traits in chickpea (Cicer arietinum L.). 3 Biotech 8:43.
Ranjan R, Khurana R, Malik N, Badoni S, Parida SK, Kapoor S, Tyagi AK (2017) bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice. Scientific Reports 7:43397.
Malik N, Dwivedi N, Singh AK, Parida SK, Agarwal P, Thakur JK, Tyagi AK (2016) An integrated genomic strategy delineates candidate mediator genes regulating grain size and weight in rice. Scientific Reports 6:23253.
Bhadouria J, Singh AP, Mehra P, Verma L, Srivastawa R, Parida SK, Giri J (2017) Identification of purple acid phosphatases in chickpea and potential roles of CaPAP7 in seed phytate accumulation. Scientific Reports 7:11012.
Jha UC, Bohra A, Parida SK, Jha R (2017) Integrated “omics” approaches to sustain global productivity of major grain legumes under heat stress. Plant Breeding 136:437-459
Gupta S, Nawaz K, Parween S, Roy R, Sahu K, Pole AK, Khandal H, Srivastava R, Parida SK, Chattopadhyay D (2016) Draft genome sequence of Cicer reticulatum L., the wild progenitor of chickpea provides a resource for agronomic trait improvement. DNA Research 24:1-10.
Kumar V, Singh A, Amitha Mithra SV, Krishnamurthy SL, Parida SK, Jain S, Tiwari KK, Kumar P, Rao AR, Sharma SK, Khurana JP, Singh NK, Mohapatra T (2015) Genome-wide association mapping of salinity tolerance in rice (Oryza sativa). DNA Research 22:133-145.
Parween S, Nawaz K, Roy R, Pole AK, Venkata Suresh B, Misra G, Jain M, Yadav G, Parida SK, Tyagi AK, Bhatia S, Chattopadhyay D (2015) An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.). Scientific Reports 5:12806.
Singh AP, Pandey BK, Deveshwar P, Narnoliya L, Parida SK, Giri J (2015) JAZ repressors: potential involvement in nutrients deficiency response in rice and chickpea. Frontier in Plant Science 6:975.
Khajuria YP, Saxena MS, Gaur R, Chattopadhyay D, Jain M, Parida SK, Bhatia S (2015) Development and integration of genome-wide polymorphic microsatellite markers onto a reference linkage map for constructing a high-density genetic map of chickpea. PLOS ONE10:e0125583.
Agarwal P, Parida SK, Mahto A, Das S, Mathew IE, Malik N, Tyagi AK (2014) Expanding frontiers in plant transcriptomics in aid of functional genomics and molecular breeding. Biotechnology Journal 9:1480-1492.
Mishra AK, Muthamilarasan M, Khan Y, Parida SK, Prasad M (2014) Genome-wide investigation and expression analyses of WD40 protein family in the model plant foxtail millet (Setaria italica L.). PLOS ONE 9:e86852.
Gupta S, Kumari K, Muthamilarasan M, Parida SK, Prasad M (2014) Population structure and association mapping of yield contributing agronomic traits in foxtail millet. Plant Cell Reports33:881-893.
Tiwari KK, Singh A, Pattnaik S, Sandhu M, Kaur S, Jain S, Tiwari S, Mehrotra S, Anumalla M, Samal R, Bhardwaj J, Dubey N, Sahu V, Kharshing GA, Zeliang PK, Sreenivasan K, Kumar P, Parida SK, Mithra SVA, Rai V, Tyagi W, Agarwal PK, Rao AK, Pattanayak A, Chandel G, Singh AK, Bisht IS, Bhat KV, Rao GJN, Khurana JP, Singh NK, Mohapatra T (2014) Identification of a diverse mini-core panel of Indian rice germplasm based on genotyping using microsatellite markers. Plant Breeding 134:164-171.
Muthamilarasan M, Parida SK, Prasad M (2014) Advances in wheat genomics and its potential in ensuring food security in the scenario of climate change. Proceedings of the Indian National Science Academy80:325-331.
Pandey G, Misra G, Kumari K, Gupta S, Parida SK, Chattopadhyay D, Prasad M (2013) Genome-wide development and use of microsatellite markers for large-scale genotyping applications in foxtail millet [Setaria italica (L.)]. DNA Research 20:197-207.
Muthamilarasan M, Venkata SB, Pandey G, Kumari K, Parida SK, Prasad M (2014) Development of 5123 Intron length polymorphic (ILP) markers for large-scale genotyping applications in foxtail millet. DNA Research 21:41-52.
Puranik S, Sahu PP, Mandal SN, Parida SK, Prasad M (2014) Comprehensive genome-wide survey, genomic constitution and expression profiling of the NAC transcription factor family in foxtail millet [Setaria italica (L.)]. PLOS ONE 8:e64594.
Kumari K, Muthamilarasan M, Misra G, Gupta S, Subramanian A, Parida SK, Chattopadhyay D, Prasad M (2014) Development of eSSR-markers in Setaria italica and their applicability in studying genetic diversity, cross-transferability and comparative mapping in millet and non-millet species. PLOS ONE 8:e67742.
Thakur JK, Agarwal P, Parida SK, Bajaj D, Pasrija R (2014) Sequence and expression analyses of KIX domain proteins suggest their importance in seed development and determination of seed size in rice, and genome stability in Arabidopsis. Molecular Genetics and Genomics 288:329-346.
Das B, Sengupta S, Parida SK, Roy B, Ghosh M, Prasad M, Ghose TK (2014) Genetic diversity and population structure of rice landraces from Eastern and North Eastern States of India. BMC Genetics 14:71.
Dixit N, Dokku P, Amitha Mithra SV, Parida SK, Singh AK, Singh NK, Mohapatra T (2014) Haplotype structure in grain weight gene GW2 and its association with grain characteristics in rice. Euphytica 192:55-61.
Das A, Parida SK (2014) Advances in biotechnological applications in three important food legumes. Plant Biotechnology Reports 8:83-99.
Jhanwar S, Priya P, Garg R, Parida SK, Tyagi AK, Jain M (2012) Transcriptome sequencing of wild chickpea as a rich resource for marker development. Plant Biotechnology Journal 10:690-702.
Agarwal G, Jhanwar S, Priya P, Singh VK, Saxena MS, Parida SK, Garg R, Tyagi AK, Jain M (2012) Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers. PLOS ONE 7:e52443.
Bharathi LK, Parida SK, Munshi AD, Behera TK, Raman KV, Mohapatra T (2011) Molecular diversity and phylogeny of Momordica spp. of Indian occurrence. Genetic Resources and Crop Evolution 59:937-948.
Naik PK, Alam MA, Singh H, Goyal V, Parida SK, Kalia S, Mohapatra T (2010) Assessment of genetic diversity through RAPD, ISSR and AFLP markers in Podophyllum hexandrum: a medicinal herb from the Northwestern Himalayan region. Physiology and Molecular Biology of Plants 16:1-13.
Yadava, DK, Parida SK, Dwivedi VK, Varshney A, Ghazi IA, Sujata V, Mohapatra T (2009). Cross-transferability and polymorphic potential of genomic STMS markers of Brassica species. Journal of Plant Biochemistry and Biotechnology 18:29-36.
Sonah H, Desmukh R, Parida SK, Kotasthane A (2009) Morphological and genetic variation among different isolates of Magnaporthe grisea collected from Chhattisgarh. Indian Phytopathology 62:469-477.
Koundal V, Parida SK, Yadava DK, Ali A, Koundal KR, Mohapatra T (2008). Evaluation of microsatellite markers for genome mapping in Indian mustard (Brassica juncea L.). Journal of Plant Biochemistry and Biotechnology 17:69-72.
Verma VK, Behera TK, Munshi AD, Parida SK, Mohapatra T (2007). Genetic diversity of ash gourd [(Benincasa hispida (Thunb.) Cogn.] inbred lines based on RAPD and ISSR markers and their hybrid performance. Scientia Horticulturae 113:231-237.