CHICKPEA PUBLICATIONS FROM NIPGR:
2013

  1. Jain D and Chattopadhyay D (2013) Promoter of CaZF, a chickpea gene that positively regulates growth and stress tolerance, is activated by an AP2-family transcription factor CAP2. PLoS One 8: e56737.


  2. Jain M, Misra G, Patel R, Priya P, Jhanwar S, Khan A, Shah N, Singh V, Garg R, Jeena G, Yadav M, Kant C, Sharma P, Yadav G, Bhatia S, Tyagi A and Chattopadhyay D (2013) A draft genome sequence of the pulse crop chickpea (Cicerarietinum L.). Plant Journal (In Press).DOI : 10.1111/tpj.12173.


  3. Jaiswal P, Cheruku JR, Kumar K, Yadav S, Singh A, Kumari P, Dube SC, Upadhyaya KC and Verma PK (2012) Differential transcript accumulation in chickpea during early phases of compatible interaction with a necrotrophic fungus Ascochytarabiei. Mol. Biol. Rep. (In Press).


  4. Kaur H, Verma P, Petla BP, Rao V, Saxena SC and Majee M (2013) Ectopic expression of the ABA-inducible dehydration-responsive chickpea L-myo-inositol 1-phosphate synthase 2 (CaMIPS2) in Arabidopsis enhances tolerance to salinity and dehydration stress. Planta (In Press).


  5. Verma P, Kaur H, Petla BP, Rao V, Saxena SC and Majee M (2013) PROTEIN L- ISOASPARTYL METHYLTRANSFERASE2 gene is differentially expressed in chickpea and enhances seed vigor and longevity by reducing abnormal isoaspartyl accumulation predominantly in seed nuclear proteins. Plant Physiol. (In Press).




2012

  1. Agarwal G, Jhanwar S, Priya P, Singh VK, Saxena MS, Parida SK, Garg R, Tyagi AK and Jain M (2012) Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers. PLoS One 7: e52443.


  2. Choudhary S, Guar R, Gupta S and Bhatia S (2012) EST-derived genic molecular markers: development and utilization for generating an advanced transcript map of chickpea. Theor. Appl. Genet. 124: 1449-1462.


  3. Gaur R, Azam S, Jeena G, Khan AW, Choudhary S, Jain M, Yadav G, Tyagi AK, Chattopadhyay D and Bhatia S (2012) High-Throughput SNP discovery and genotyping for constructing a saturated linkage map of Chickpea (Cicerarietinum L.). DNA Res. 19: 357-373.


  4. Islam MN, Nizam S and Verma PK (2012) A highly efficient Agrobacterium mediated transformation system of chickpea wilt pathogen Fusariumoxysporum f. sp. ciceri using DsRed-Express to follow root colonization. Microbiol. Res. 167: 332-338.


  5. Jaiswal P, Cheruku JR, Kumar K, Yadav S, Singh A, Kumari P, Dube SC, Upadhyaya KC and Verma PK (2012) Differential transcript accumulation in chickpea during early phases of compatible interaction with a necrotrophic fungus Ascochytarabiei. Mol. Biol. Rep. 39: 4635-4646


  6. Jhanwar S, Priya P, Garg R, Parida SK, Tyagi AK and Jain M (2012) Transcriptome sequencing of wild chickpea as a rich resource for marker development. Plant Biotechnol. Journal 10: 690-702.


  7. Wardhan V, Jahan K, Gupta S, Chennareddy S, Datta A, Chakraborty S and Chakraborty N (2012) Overexpression of CaTLP1, a putative transcription factor in chickpea (Cicerarietinum L.), promotes stress tolerance. Plant Mol. Biol. 79: 479-493



  8. Yadav S, Kushwaha HR, Kumar K and Verma PK (2012) Comparative structural modelling of a monothiol GRX from chickpea: insight in iron-sulfur cluster assembly. Int. J. Biol. Macromol. 51: 266-273





2011


  1. Bhushan D, Jaiswal DK, Ray D, Basu D, Datta A, Chakraborty S and Chakraborty N (2011) Dehydration-responsive reversible and irreversible changes in the extracellular matrix: comparative proteomics of chickpea genotypes with contrasting tolerance. J. Proteome Res. 10: 2027-2046.


  2. Garg R and Jain M (2011) Pyrosequencing data reveals tissue-specific expression of lineage-specific transcripts in chickpea. Plant Signal. Behav. 6: 1868-1870.


  3. Garg R, Patel RK, Jhanwar S, Priya P, Bhattacharjee A, Yadav G, Bhatia S, Chattopadhyay D, Tyagi AK and Jain M (2011) Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development. Plant Physiol. 156: 1661-1678.


  4. Garg R, Patel RK, Tyagi AK and Jain M (2011) De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. DNA Res. 18: 53-63.


  5. Gaur R, Sethy NK, Choudhary S, Shokeen B, Gupta V and Bhatia S (2011) Advancing the STMS genomic resources for defining new locations on the intraspecific genetic linkage map of chickpea (Cicer arietinum L.). BMC Genomics 12: 117.


  6. Gujaria N, Kumar A, Dauthal P, Dubey A, Hiremath P, Bhanu Prakash A, Farmer A, Bhide M, Shah T, Gaur PM, Upadhyaya HD, Bhatia S, Cook DR, May GD and Varshney RK (2011) Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). Theor. Appl. Genet.122: 1577-1589.


  7. Gupta S, Wardhan V, Verma S, Gayali S, Rajamani U, Datta A, Chakraborty S and Chakraborty N (2011) Characterization of the secretome of chickpea suspension culture reveals pathway abundance and the expected and unexpected secreted proteins. J. Proteome Res. 10: 5006-5015.




2010


  1. Garg R, Sahoo A, Tyagi AK and Jain M (2010) Validation of internal control genes for quantitative gene expression studies in chickpea (Cicer arietinum L.). Biochem. Biophys. Res. Comm. 396: 283-288.


  2. Jain D and Chattopadhyay D (2010) Analysis of gene expression in response to water deficit of chickpea (Cicer arietinum L.) varieties differing in drought tolerance. BMC Plant Biol. 10:24.


  3. Nizam S, Singh K and Verma PK (2010) Expression of the fluorescent proteins DsRed and EGFP to visualize early events of colonization of the chickpea blight fungus Ascochyta rabiei. Current Genetics 56: 391-399.


  4. Verma P, Singh A, Kaur H and Majee M (2010) Protein L :- isoaspartyl methyltransferase1 (CaPIMT1) from chickpea mitigates oxidative stress-induced growth inhibition of Escherichia coli. Planta 231:329-336.



2009


  1. Ashraf N, Ghai D, Barman P, Basu S, Gangisetty N, Mandal MK, Chakraborty N, Datta A and Chakraborty S (2009) Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrate predicted and unexpected genes and novel regulators of plant immunity. BMC Genomics 10:415.


  2. Choudhary S, Sethy NK, Shokeen B and Bhatia S (2009) Development of chickpea EST-SSR markers and analysis of allelic variation across related species. Theor. Appl. Genet. 118: 591-608.


  3. Jain D, Roy N and Chattopadhyay D (2009) CaZF, a plant transcription factor functions through and parallel to HOG and calcineurin pathways in Saccharomyces cerevisiae to provide osmotolerance. PLoS ONE 4: e5154.


  4. Shukla RK, Tripathi V, Jain D, Yadav RK and Chattopadhyay D (2009) CAP2 enhances germination of transgenic tobacco seeds at high temperature and promotes heat stress tolerance in yeast. FEBS J. 276:5252-5262.


  5. Tripathi V, Parasuraman B, Laxmi A and Chattopadhyay D (2009) CIPK6, a CBL-interacting protein kinase is required for development and salt tolerance in plant. Plant Journal 58:778-790.


  6. Tripathi V, Syed N, Laxmi A and Chattopadhyay D (2009) Role of CIPK6 in root growth and auxin transport. Plant Signal. Behav. 4:663-665.



2008


  1. Kaur H, Shukla RK, Yadav G, Chattopadhyay D and Majee M (2008) Two divergent genes encoding L-myoinositol-1-phosphate synthase I (CaMIPS1 and CaMIPS2) are differentially expressed in chickpea. Plant Cell Environ. 31:1701-1716.


  2. Pandey A, Chakraborty S, Datta A and Chakraborty N (2008) Proteomics approach to identify dehydration responsive nuclear proteins from chickpea (Cicer arietinum L.). Mol. Cell. Proteomics 7: 88-107.


  3. Singh A, Singh IK and Verma PK (2008) Differential transcript accumulation in Cicer arietinum L. in response to a chewing insect Helicoverpa armigera and defense regulators correlate with reduced insect performance J. Exp. Bot. 59: 2379-2392.



2007


  1. Bhushan D, Pandey A, Choudhary MK, Datta A, Chakraborty S and Chakraborty N (2007) Comparative proteomics analysis of differentially expressed proteins in chickpea extracellular matrix during dehydration stress. Mol. Cell. Proteomics 6: 1868 -1884.


  2. Varshney RK, Hoisington DA, Upadhyaya HD, Gaur PM, Nigam SN, Saxena K, Vadez V, Sethy NK, Bhatia S, Aruna R, Gowda MVC and Singh NK (2007) Molecular genetics and breeding of grain legume crops for the semi-arid tropics. Varshney RK and Tuberosa R (eds.), Genomic Assisted Crop Improvement, Vol 2: Genomics Applications in Crops. Springer, Dordrecht, The Netherlands, pp 207-241.



2006


  1. Bhushan D, Pandey A, Chattopadhyay A, Choudhary MK, Chakraborty S, Datta A and Chakraborty N (2006) Extracellular matrix proteome of chickpea (Cicer arietinum L.) illustrates pathway abundance, novel protein functions and evolutionary perspect. J. Proteome Res. 5: 1711-1720.


  2. Choudhary S, Sethy NK, Shokeen B and Bhatia S (2006) Development of sequence-tagged microsatellite site markers for chickpea (Cicer arietinum L.). Molecular Ecology Notes 6: 93-95.


  3. Pandey A, Choudhary MK, Bhushan D, Chattopadhyay A, Chakraborty S, Datta A and Chakraborty N (2006) The nuclear proteome of chickpea (Cicer arietinum L.) reveals predicted and unexpected proteins. J. Proteome Res. 5: 3301-3311.


  4. Sethy NK, Choudhary S, Shokeen B and Bhatia S (2006) Identification of microsatellite markers from Cicer reticulatum: molecular variation and phylogenetic analysis. Theor. Appl. Genet.112: 347-357.


  5. Sethy NK, Shokeen B, Edwards KJ and Bhatia S (2006) Development of microsatellite markers and analysis of intraspecific genetic variability in chickpea (Cicer arietinum L.). Theor. Appl. Genet. 112: 1416-1428.


  6. Shukla RK, Raha S, Tripathi V and Chattopadhyay D (2006) Expression of CAP2, an AP2-family transcription factor from chickpea enhances growth and tolerance to dehydration and salt tress in transgenic tobacco. Plant Physiology 142:113-123.



2004


  1. Boominathan P, Shukla R, Kumar A, Manna D, Negi D, Verma PK and Chatopadhyay D (2004) Long term transcript accumulation during the development of dehydration adaptation in Cicer arietinum L. Plant Physiology 135:1608-1620.


  2. Tewrai-Singh N, Sen J, Kiesecker H, Reddy VS, Jacobsen HJ and Guha-Mukherjee (2004) Use of a herbicide or lysine and threonine for non-antibiotic selection of transgenic chickpea. Plant Cell Reports 22: 576-583.

2003


  1. Sethy NK, Shokeen B and Bhatia S (2003) Isolation and characterization of sequence-tagged microsatellite sites markers in chickpea (Cicer arietinum L.). Mol. Ecol. Notes 3: 428-430.