INSA Senior Scientist
FNA, FNASc, FNAAS
Ph. D: Jawaharlal Nehru University, New Delhi
- 91-11-26741612,14,17 Ext. - 178
- nchakraborty@nipgr.ac.in, nchakraborty@hotmail.com
Profile
Research
The research in my laboratory is aimed at elucidation of the molecular circuitry used by plants in response to environmental stress. This enables the identification of key components which would help in their targeted manipulation in transgenic plants. Our efforts to address these involve utilization of a repertoire of approaches, which include physiochemical, proteomic and genomic tools. Recent advances in proteomics have created an opportunity for dissecting quantitative and qualitative traits in a more meaningful way. The proteomics approach is ideally suited for fast and sensitive analysis of the functions of the plant genes and gene-products, the proteins. Our research interest can be grouped under two thrust areas: stress proteomics, and gene expression and regulation.
Stress Proteomics
The application of proteomics technologies to advance our knowledge of stress tolerance in crop species has increased dramatically in the past few years. We are focusing on subcellular proteomics and using a number of proteome mining tools to understand the role of protein modifications and/or their differential expression under stress conditions. We have developed differential proteomes in response to various environmental stresses. The major focus is to discover the regulatory genes that control stress tolerance in crop plants, which would not only aid in elucidation of the underlying mechanism(s) of stress tolerance, but also serve as a valuable resource for engineering strategies towards improved stress adaptation.
Gene Expression and Regulation
Stress tolerance is a quantitative trait determined by multiple and complex genetic interactions. Plant response to stress involves changes in the expression of thousands of genes, which in turn are affected by complex interactions with the environment, beyond the stress of interest. To better understand the interdependent action of an array of genes, my group has been working on several crop species, owing to the variable degree of tolerance among cultivars. This approach provides correlative evidence for genes involved in stress adaptation. While our research has shown the involvement of several novel genes in stress physiology, the richness of the candidate genes points to the enormity of the complexity to be deciphered for understanding the stress-responsive network.
Awards & Honors
Fellow, Indian National Science Academy, India
Fellow, National Academy of Agricultural Sciences, India
Fellow, National Academy of Sciences, India
DBT Award of Biotechnology Overseas Associateship
ICCR Commonwealth Scholarship and Fellowship
Publications
Lande, N.V., Barua, P., Gayen, D., Wardhan, V., Jeevraj, T., Chakraborty, S. and┬аChakraborty, N.┬а(2022) Dehydration-responsive chickpea chloroplast protein, CaPDZ1, confers dehydration tolerance by improving photosynthesis.┬аPhysiol. Plant.┬а174: e13613
Kumar, S., Lande, N.V., Barua, P., Pareek, A., Chakraborty, S. and┬аChakraborty, N.┬а(2022) Proteomic dissection of rice cytoskeleton reveals the dominance of microtubule and microfilament proteins, and novel components in the cytoskeleton-bound polysome.┬аPlant Physiol. Biochem.┬а170: 75-86
Rathi, D., Verma, J.K., Chakraborty, S. and┬аChakraborty, N.┬а(2022) Dissection of grasspea (Lathyrus sativus L.) root exoproteome reveals critical insights and novel proteins.┬аPlant Sci.┬а316: 111161
Mishra, D., Shekhar, S., Chakraborty, S. and┬аChakraborty, N.┬а(2021) High temperature stress responses and wheat: Impacts and alleviation strategies.┬аEnviron. Exp. Bot.┬а190: 104589
Mishra, D., Shekhar, S., Chakraborty, S. and┬аChakraborty, N.┬а(2021) Wheat 2-Cys peroxiredoxin plays a dual role in chlorophyll biosynthesis and adaptation to high temperature.┬аPlant J.┬а105: 1374-1389.
Pareek, A., Mishra, D., Rathi, D., Verma, J.K., Chakraborty, S. and┬аChakraborty, N.┬а(2021) The small heat shock proteins, chaperonin 10, in plants: An evolutionary view and emerging functional diversity.┬аEnviron. Exp. Bot.┬а182: 104323
Rathi, D., Chakraborty, S. and┬аChakraborty, N.┬з (2021) Grasspea, a critical recruit among neglected and underutilized legumes, for tapping genomic resources.┬аCurr. Plant Biol.┬а26: 100200
Kumar, R., Barua, P.,┬аChakraborty, N.┬аand Nandi A.K. (2020) Systemic acquired resistance specific proteome of┬аArabidopsis thaliana.┬аPlant Cell Rep.┬а39: 1549-1563
Rai, Y., Wardhan, V., Gupta, D.B. and┬аChakraborty, N.┬а(2020) Calcium-dependent changes in physicochemical properties and the proteome dynamics influence dehydration responses in rice.┬аEnviron. Exp. Bot.┬аDOI: 10.1016/j.envexpbot.2019.103965
Narula, K., Elagamey, E., Abdellatef, M.A.E., Sinha, A., Ghosh, S.,┬аChakraborty, N.┬аand Chakraborty, S. (2020) ChitosanтАРtriggered immunity to Fusarium in chickpea is associated with changes in the plant extracellular matrix architecture, stomatal closure and remodelling of the plant metabolome and proteome.┬аPlant J.┬а103: 561-583
Sinha, A., Haider, T., Narula, K., Ghosh, S.,┬аChakraborty, N.┬аand Chakraborty, S. (2020) Integrated seed proteome and phosphoproteome analyses reveal interplay of nutrient dynamics, carbonтАРnitrogen partitioning and oxidative signaling in chickpea.┬аProteomics┬а20: 1900267
Barua, P., Lande, N.V., Kumar, S., Chakraborty, S. and┬аChakraborty, N.┬а(2020) Quantitative phosphoproteomic analysis of legume using TiO2-based enrichment coupled with isobaric labeling.┬аMethods Mol. Biol.┬а2107: 395-406
Lande, N.V., Barua, P., Gayen, D., Kumar, S., Varshney, S., Sengupta, S., Chakraborty, S. and┬аChakraborty, N.┬а(2020) Dehydration-induced alterations in chloroplast proteome and reprogramming of cellular metabolism in developing chickpea delineate interrelated adaptive responses.┬аPlant Physiol. Biochem.┬а146: 337-348
Lande, N.V., Barua, P., Gayen, D., Kumar, S., Chakraborty, S. and┬аChakraborty, N.┬а(2020) Proteomic dissection of the chloroplast: Moving beyond photosynthesis.┬аJ. Proteomics┬а212: 103542
Elagamey, E., Narula, K.,┬аChakraborty, N.┬аand Chakraborty, S. (2020) Extracellular matrix proteome: Isolation of ECM proteins for proteomics studies.┬аMethods Mol. Biol.┬а2057: 155-172
Pareek, A., Rathi, D., Mishra, D., Chakraborty, S. and┬аChakraborty, N.┬а(2019) Physiological plasticity to high temperature stress in chickpea: Adaptive responses and variable tolerance.┬аPlant Sci.┬а289: 110258
Rathi, D., Pareek, A., Zhang, T., Pang, Q., Chen, S., Chakraborty, S. and┬аChakraborty, N.┬а(2019) Metabolite signatures of grasspea suspension-cultured cells illustrate the complexity of dehydration response.┬аPlanta┬а250: 857-871
Narula K, Choudhary P, Ghosh S, Elagamey E, Chakraborty N and Chakraborty S (2019) Comparative nuclear proteomics analysis provides insight into the mechanism of signaling and immune response to blast disease caused by┬аMagnoporthe oryzae┬аin rice.┬аProteomics┬а19: e1800188.
Rathi, D., Gayali, S., Pareek, A., Chakraborty, S. and┬аChakraborty, N.┬а(2019) Transcriptome profiling illustrates expression signatures of dehydration tolerance in developing grasspea seedlings.┬аPlanta┬а250: 839-855
Gayen, D., Barua, P., Lande, N.V., Varshney, S., Sengupta, S., Chakraborty, S. and┬аChakraborty, N.┬а(2019) Dehydration-responsive alterations in the chloroplast proteome and cell metabolomics profile of rice reveals key stress adaptation responses.┬аEnviron. Exp. Bot.┬а160: 12-24
Gayen, D., Gayali, S., Barua, P., Lande, N.V., Varshney, S., Sengupta, S., Chakraborty, S. and┬аChakraborty, N.┬а(2019) Dehydration-induced proteomic landscape of mitochondria in chickpea reveals large-scale coordination of key biological processes.┬аJ. Proteomics┬а192: 267-279
Barua, P., Lande, N.V., Subba, P., Gayen, D., Pinto, S., Prasad, T.S.K., Chakraborty, S. and┬аChakraborty, N.┬а(2019) Dehydration-responsive nuclear proteome landscape of chickpea (Cicer arietinum┬аL.) reveals phosphorylation-mediated regulation of stress response.┬аPlant Cell Environ.┬а42: 230-244
Narula, K., Choudhary, P., Ghosh, S., Elagamey, E.,┬аChakraborty, N.┬аand Chakraborty, S. (2019) Comparative nuclear proteomics analysis provides insight into mechanism of signalling and immune response to blast disease caused by┬аMagnaporthe oryzae┬аin rice.┬а┬аProteomics┬а19: 1800188
Mishra, D., Shekhar, S., Chakraborty, S. and┬аChakraborty, N.┬а(2018) Carboxylase clamp tetratricopeptide repeat (TPR) domain containing Hsp90 cochaperones in Triticaace: an insight into structural and functional diversification.┬аEnviron. Exp. Bot.┬а155: 31-44
Aggarwal, P.R., Nag, P., Choudhary, P.,┬аChakraborty, N.┬аand Chakraborty, S. (2018) Genotype-independent┬аAgrobacterium rhizogenes┬аmediated root transformation of chickpea: a rapid and efficient method for reverse genetics studies.┬аPlant Methods14:55.
Rathi, D., Pareek, A., Gayali, S., Chakraborty, S. and┬аChakraborty, N.┬а(2018) Variety-specific nutrient acquisition and dehydration-induced proteomic landscape of grasspea (Lathyrus sativus┬аL.).┬аJ. Proteomics┬а183:45-57
Ashraf, N., Basu, S., Narula, K., Ghosh, S., Tayal, R., Gangisetty, N., Biswas, S., Aggarwal, P.,┬аChakraborty, N.┬аand Chakraborty, S. (2018) Integrative network analysis of wilt transcriptome in chickpea reveal genotype dependent regulatory hubs in immunity and susceptibility.┬аSci. Rep.┬а8: 6528
Parveen, S., Pandey, A., Jameel, N., Chakraborty, S. and┬аChakraborty, N.┬а(2018) Transcriptional regulation of chickpea ferritin CaFer1 influences its role in iron homeostasis and stress response.┬аJ. Plant Physiol.┬а222: 9-16
Verma, J.K., Wardhan, V., Singh, D., Chakraborty, S. and┬аChakraborty, N.┬а(2018) Genome-wide identification of the Alba gene family in plants and stress-responsive expression of the rice Alba genes.┬аGenes┬а9: E183
Mishra, P., Wardhan, V., Pandey, A., Chakraborty, S., Garg, G. and┬аChakraborty, N.┬а(2017) Comparative analysis of sequence-structure function relationship of the SUN-domain protein CaSUN1.┬аJ.┬аPhylogentics Evol. Biol.5: 189
Elagamey, E., Narula, K., Sinha, A., Ghosh, G., Abdellatef, M.A.E.,┬аChakraborty, N.┬аand Chakraborty, S. (2017) Quantitative extracellular matrix proteomics suggests cell wall reprogramming in host-specific immunity during vascular wilt caused by┬аFusarium oxysporum┬аin chickpea.┬аProteomics┬аDOI: 10.1002/pmic.201600374
Elagamey, E., Sinha, A., Narula, K., Abdellatef, M.A.E.,┬аChakraborty, N.┬аand Chakraborty, S. (2017) Molecular dissection of extracellular matrix proteome reveals discrete mechanism regulating verticillium dahliae triggered vascular wilt disease in potato.┬аProteomics┬а17: 201600373
Nag, P., Aggarwal, P.R., Ghosh, S., Narula, K., Tayal, R., Maheshwari, N.,┬аChakraborty, N.┬аand Chakraborty, S. (2017) Interplay of neuronal and non-neuronal genes regulates intestinal DAF-16-mediated immune response during┬аFusarium┬аinfection of┬аCaenorhabditis elegans.┬аCell Death Discov.┬а 3: e17073
Lande, N.V., Subba, P., Barua, P., Gayen, D., Prasad, T.S.K., Chakraborty, S. and┬аChakraborty, N.┬а(2017) Dissecting the chloroplast proteome of chickpea (Cicer arietinum L.) provides new insights into classical and non-classical functions.┬аJ. Proteomics┬а165: 11-20
Mishra, D., Shekhar, S., Agrawal, L., Chakraborty, S. and┬аChakraborty, N.┬а(2017) Cultivar-specific high temperature stress responses in bread wheat (Triticum aestivum┬аL.) associated with physicochemical traits and defense pathways.┬аFood Chem.┬а221:┬а 1077-1087
Barua, P., Gayen, D., Lande, N.V., Chakraborty, S. and┬аChakraborty, N.┬а(2017) Global proteomic profiling and identification of stress-responsive proteins using two-dimensional gel electrophoresis.┬аMethods Mol. Biol.1631:┬а163-179
Pandey, A., Chakraborty, S. and┬аChakraborty, N.┬а(2017) Nuclear proteome: Isolation of intact nuclei, extraction of nuclear proteins and 2-DE analysis.┬аMethods Mol. Biol.┬а1696: 41-55
Kumar, V., Chattopadhyay, A., Ghosh, S., Irfan, M.,┬аChakraborty, N., Chakraborty, S. and Datta, A. (2016) Improving nutritional quality and fungal tolerance in soya bean and grass pea by expressing an oxalate decarboxylase.┬аPlant Biotechnol. J.┬а14: 1394-405
Ghosh, S., Narula, K., Sinha, A., Ghosh, R., Jawa, P.,┬аChakraborty, N.┬аand Chakraborty, S. (2016) Proteometabolomic analysis of transgenic tomato overexpressing oxalate decarboxylase uncovers novel proteins potentially involved in defense mechanism against┬аSclerotinia.┬аJ. Proteomics┬а143: 242-253
Ghosh, S., Narula, K., Sinha, A., Ghosh, R., Jawa, P.,┬аChakraborty, N.┬аand Chakraborty, S. (2016) Proteometabolomic study of compatible interaction in tomato fruit challenged with┬аSclerotinia rolfsii┬аillustrates novel protein network during disease progression.┬аFront. Plant Sci.┬а7: 1034
Narula, K., Ghosh, S., Aggarwal, P.R., Sinha, A.,┬аChakraborty, N.┬аand Chakraborty, S. (2016) Comparative proteomics of oxalate downregulated tomatoes points toward cross talk of signal components and metabolic consequences during post-harvest storage.┬аFront. Plant Sci.┬а7: 1147
Shekhar, S., Agrawal, L., Mishra, D., Buragohain, A.K., Unnikrishnan, M., Chokkappan, M.C., Chakraborty, S. and┬аChakraborty, N.┬а(2016) Ectopic expression of amaranth seed storage albumin modulates photoassimilate transport and nutrient acquisition in sweetpotato.┬аSci. Rep.┬а6: 25384
Parveen, S., Gupta, D.B., Dass, S., Kumar, A., Pandey, A., Chakraborty, S. and┬аChakraborty, N.┬а(2016) Chickpea ferritin CaFer1 participates in oxidative stress response, and promotes growth and development.┬аSci. Rep.┬а6: 31218
Wardhan, V., Pandey, A., Chakraborty, S. and┬аChakraborty, N.┬а(2016) Chickpea transcription factor CaTLP1 interacts with protein kinases, modulates ROS accumulation and promotes ABA-mediated stomatal closure.┬аSci. Rep.┬а6: 38121
Biswas, S., Aggarwal, P.R., Tayal, R., Sarkar, M.P.,┬аChakraborty, N.┬аand Chakraborty, S. (2016) RNA-seq analysis identifies key genes involved in chickpea (Cicer arietinum┬аL.) shoot development.┬аJ. Bot. Soc. Bengal┬а70: 49-54
Gayali, S., Acharya, S., Lande, N.V., Pandey, A., Chakraborty, S. and┬аChakraborty, N.┬а(2016) CicerTransDB 1.0: a resource for expression and functional study of chickpea transcription factors.┬аBMC Plant Biol.┬а16: 169
Barua, P., Subba, P., Vikram, L.N., Mangalaparthi, K.K., Prasad, T.S.K., Chakraborty, S. and┬аChakraborty, N.┬а(2016) Gel-based and gel-free search for plasma membrane proteins in chickpea (Cicer arietinum┬аL.) augments the comprehensive data sets of membrane protein repertoire.┬аJ. Proteomics┬а143:199-208
Shekhar, S., Mishra, D., Gayali, S., Buragohain, A.K., Chakraborty, S. and┬аChakraborty, N.┬а(2016) Comparison of proteomic and metabolomic profiles of two contrasting ecotypes of sweetpotato (Ipomoea batata┬аL).┬аJ. Proteomics┬а143: 306-317
Ghosh, S., Narula, K., Mittal, P.K., Sarkar, M.P.,┬аChakraborty, N.┬аand Chakraborty, S. (2016) Proteomic profile reveals the diversity and complexity of leaf proteins in spinach (Beta vulgaris┬аvar. all green).┬аJ. Proteins Proteomics┬а7: 121-131
Elagamey, E., Narula, K., Sinha, A., Aggarwal, P.R., Ghosh, S.,┬аChakraborty, N.┬а┬аand Chakraborty, S. (2016) Extracellular matrix proteome and phosphoproteome of potato reveals functionally distinct and diverse canonical and non-canonical proteoforms.┬аProteomes┬а4: 20
Irfan, M., Ghosh, S., Meli, M.S., Kumar, A., Kumar, V.,┬аChakraborty, N., Chakraborty, S. and Datta, A. (2016) Fruit ripening regulation of alpha-mannosidase expression by the MADS box transcription factor RIPENING INHIBITOR and ethylene.┬аFront. Plant Sci.┬а7: 10
Kumar, V., Irfan, M., Ghosh, S.,┬аChakraborty, N., Chakraborty, S. and Datta, A. (2016) Fruit ripening mutants reveal cell metabolism and redox state during ripening.┬аProtoplasma┬а253: 581-594. [IF 3.356]
Rathi, D., Gayen, D., Gayali, S., Chakraborty, S. and┬аChakraborty, N.┬а(2016) Legume proteomics: progress, prospects and challenges.┬аProteomics┬а16: 310-327
Gupta, D.B., Rai, Y., Gayali, S., Chakraborty, S. and┬аChakraborty, N.┬а(2016) Plant organellar proteomics in response to dehydration: turning protein repertoire into insights.┬аFront. Plant Sci.┬а7: 460
Rathi, D., Chakraborty, S. and┬аChakraborty, N.┬а(2015) Proteomics of an orphan legume, grasspea: current status and future strategy.┬аPlant Tissue Cult. Biotechnol.┬а25: 117тАР141
Narula, K., Pandey, A., Gayali, S.,┬аChakraborty, N.┬аand Chakraborty, S. (2015) Birth of plant proteomics in India: a new horizon.┬аJ. Proteomics┬а127: 34-43
Chakraborty, N.┬а(2015) Rice proteomics and beyond.┬аJ. Rice Res.┬а3: e113
Shekhar, S., Mishra, D., Buragohain, A.K., Chakraborty, S. and┬аChakraborty, N.┬а(2014) Comparative analysis of phytochemicals and nutrient availability in two contrasting cultivars of sweet potato (Ipomoea batatas┬аL.).┬аFood Chem.┬а173: 957-965
Gupta, S., Wardhan, V., Kumar, A., Rathi, D., Pandey, A., Chakraborty, S. and┬аChakraborty, N.┬а(2015) Secretome analysis of chickpea reveals dynamic extracellular remodeling and identifies a Bet v1-like protein, CaRRP1 that participates in stress response.┬аSci. Rep.┬а5: 18427
Jaiswal, D.K., Mishra, P., Subba, P., Rathi, D., Chakraborty, S. and┬аChakraborty, N.┬а(2014) Membrane-associated proteomics of chickpea identifies Sad1/UNC-84 protein (CaSUN1), a novel component of dehydration signaling.┬аSci.┬аRep.┬а4: 4177
Irfan, M., Ghosh, S., Kumar, V.,┬аChakraborty, N., Chakraborty, S. and Datta, A. (2014) Insights into transcriptional regulation of ╬▓-D-N acetylhexosaminidase,an N-glycan-processing enzyme involved in ripening-associated fruit softening.┬аJ. Exp. Bot.65: 5835-5848
Kumar, R., Kumar, A., Subba, P., Gayali, S., Barua, P., Chakraborty, S. and┬аChakraborty, N.┬а(2014) Nuclear phosphoproteome of developing chickpea seedlings (Cicer arietinum┬аL.) and protein-kinase interaction network.┬аJ. Proteomics┬а105: 58-73
Verma, J.K., Gayali, S., Dass, S., Kumar, A., Parveen, S., Chakraborty, S. and┬аChakraborty, N.┬а(2014) OsAlba1, a dehydration-responsive nuclear protein of rice (Oryza sativa L.), participates in stress adaptation.┬аPhytochemistry┬а100: 16-25
Chakraborty, N., Ghosh, R., Ghosh, S., Narula, K., Tayal, R., Datta, A. and Chakraborty, S. (2013) Reduction of oxalate levels in tomato fruit and consequent metabolic remodeling following overexpression of a fungal oxalate decarboxylase.┬аPlant Physiol.162: 364-378
Agrawal, L., Narula, K., Basu, S., Shekhar, S., Ghosh, S., Datta, A.,┬аChakraborty, N.┬аand Chakraborty, S. (2013) Comparative proteomics reveals a role for seed storage protein, AmA1 in cellular growth, development and nutrient accumulation.┬аJ. Proteome Res.5: 4904-4930
Subba, P., Barua, P., Kumar, R., Datta, A., Soni, K., Chakraborty, S. and┬аChakraborty, N.┬а(2013) Phosphoproteomic dynamics of chickpea (Cicer arietinum┬аL.) reveals shared and distinct components of dehydration response.┬аJ. Proteome Res.┬а12: 5025-5047
Jaiswal, D.K., Ray, D., Choudhary, M., Subba, P., Kumar, A., Verma, J., Kumar, R., Datta, A., Chakraborty, S. and┬аChakraborty, N.┬а(2013) Comparative proteomics of dehydration response in the rice nucleus: new insights into the molecular basis of genotype specific adaptation.┬аProteomics13: 3478-3497
Subba, P., Kumar, R., Gayali, S., Shekhar, S., Parveen, S., Pandey, A., Datta, A., Chakraborty, S. and┬аChakraborty, N.┬а(2013) Characterisation of the nuclear proteome of a dehydration-sensitive cultivar of chickpea and comparative proteomic analysis with a tolerant cultivar.┬аProteomics┬а13: 1973-1992
Ghosh, S., Singh, U.K., Meli, V.S., Kumar, V., Kumar, A., Irfan, M.,┬аChakraborty, N., Chakraborty, S. and Datta, A. (2013) Induction of senescence and identification of differentially expressed genes in tomato in response to monoterpene.┬аPLoS One┬а8: e76029
Shekhar, S., Agrawal, L., Buragohain, A.K., Datta, A., Chakraborty, S. and┬аChakraborty, N.┬а(2013) Genotype independent regeneration and┬аagrobacterium-mediated genetic transformation of sweet potato (Ipomoea batatas┬аL.).┬аPlant Tissue Cult. Biotechnol.┬а23:┬а87-100
Deswal, R., Gupta, R., Dogra, V., Singh, R., Abat, J.K., Sarkar, A., Mishra, Y., Rai, V., Sreenivasulu, Y., Amalraj, R.S., Raorane, M., Chaudhary, R.P., Kohli, A., Giri, A.P.,┬аChakraborty, N., Zargar, S.M., Agrawal, V.P., Agrawal, G.K., Job, D., Renaut, J. and Rakwal, R. (2013) Plant proteomics in India and Nepal: current status and challenges ahead.┬аPhysiol. Mol. Biol. Plants┬а19: 461-477
Narula, K., Datta, A.,┬аChakraborty, N.┬аand Chakraborty, S. (2013) Comparative analyses of nuclear proteome: extending its function.┬аFront. Plant Sci.┬а4: 100
Jaiswal, D.K., Ray, D., Subba, P., Mishra, P., Gayali, S., Datta, A., Chakraborty, S. and┬аChakraborty, N.┬з (2012) Proteomic analysis reveals the diversity and complexity of membrane proteins in chickpea (Cicer arietinum┬аL.).┬аProteome Sci.┬а10: 59
Wardhan, V., Jahan, K., Gupta, S., Chennareddy, S., Datta, A., Chakraborty, S. and┬аChakraborty, N.┬а(2012) Overexpression of CaTLP1, a putative transcription factor in chickpea (Cicer arietinum┬аL.), promotes stress tolerance.┬аPlant Mol. Biol.┬а79: 479-493
Kamthan, A., Kamthan, M., Azam, M.,┬аChakraborty, N., Chakraborty, S. and Datta, A. (2012) Expression of a fungal sterol desaturase improves tomato drought tolerance, pathogen resistance and nutritional quality.┬аSci. Rep.2: 951
Kamthan, A., Kamthan, M.,┬аChakraborty, N., Chakraborty, S. and Datta, A.(2012) A simple protocol for extraction, derivatization, and analysis of tomato leaf and fruit lipophilic metabolites using GC-MS.┬аProtoc. Exch.┬аDOI:10.1038 /protex. 2012.061
Kamthan, M., Mukhopadhyay, G.,┬аChakraborty, N., Chakraborty, S. and Datta, A. (2012) Quantitative proteomics and metabolomics approaches to demonstrate N-acetyl-d-glucosamine inducible amino acid deprivation response as morphological switch in┬аCandida albicans.┬аFungal Genet. Biol.┬а49: 369-378
Agrawal, G.K., Sarkar, A., Agrawal, R., Ndimba, B.K., Tanou, G., Dunn, M.J., Kieselbach, T., Cramer, R., Wienkoop, S., Chen, S., Rafudeen, M.S., Deswal, R., Barkla, B.J., Weckwerth, W., Heazlewood, J.L., Renaut, J., Job, D.,┬аChakraborty, N.┬аand Rakwal, R. (2012) Boosting the globalization of plant proteomics through INPPO: current developments and future prospects.┬аProteomics┬а12: 359-368
Gupta, S., Wardhan, V., Verma, S., Gayali, S., Rajamani, U., Datta, A., Chakraborty, S. and┬аChakraborty, N.┬а(2011) Characterization of the secretome of chickpea suspension culture reveals pathway abundance and the expected and unexpected secreted proteins.┬аJ. Proteome Res.┬а10: 5006-5015
Bhushan, D., Jaiswal, D.K., Ray, D., Basu, D., Datta, A., Chakraborty, S. and┬аChakraborty, N.┬а(2011) Dehydration-responsive reversible and irreversible changes in the extracellular matrix: comparative proteomics of chickpea genotypes with contrasting tolerance.┬аJ. Proteome Res.┬а10: 2027-2046
Ghosh, S., Meli, V.S., Kumar, A., Thakur, A.,┬аChakraborty, N., Chakraborty, S. and Datta, A. (2011) The N-glycan processing enzymes a-mannosidase and b-D-N-acetylhexosaminidase are involved in ripening-associated softening in the non-climacteric fruits of capsicum.┬аJ. Exp. Bot.┬а62: 571-582
Chattopadhyay, A., Subba, P., Pandey, A., Bhushan, D., Kumar, R., Datta, A., Chakraborty, S. and┬аChakraborty, N.┬а(2011) Analysis of the grasspea proteome and identification of stress-responsive proteins upon exposure to high salinity, low temperature and abscisic acid treatment.┬аPhytochemistry┬а72: 1293-1307
Chakraborty, S.,┬аChakraborty, N., Agrawal, L., Ghosh, S., Narula, K., Shekhar, S., Naik, P.S., Pande, P.C., Chakraborti, S.K. and Datta, A. (2010) Next-generation protein-rich potato expressing the seed protein gene AmA1 is a result of proteome rebalancing in transgenic tuber.┬аProc. Natl. Acad. Sci.┬аUSA┬а107: 17533-17538
Meli, V.S., Ghosh, S., Prabha, T.N.,┬аChakraborty, N., Chakraborty, S. and Datta, A. (2010) Enhancement of fruit shelf life by suppressing N-glycan processing enzymes.┬аProc.┬аNatl. Acad. Sci.┬аUSA┬а107: 2413-2418
Agrawal, G.K., Bourguignon, J., Rolland, N., Ephritikhine, G., Ferro, M., Jaquinod, M., Alexiou, K.G., Chardot, T.,┬аChakraborty, N., Jolivet, P., Doonan, J.H. and Rakwal, R. (2010) Plant organelle proteomics: collaborating for optimal cell function.┬аMass Spectrom. Rev.┬аPMID 21038434
Pandey, A., Rajamani, U., Verma, J., Subba, P.,┬аChakraborty, N., Datta A, Chakraborty, S. and┬аChakraborty, N.┬а(2010) Identification of extracellular matrix proteins of rice (Oryza sativa┬аL.) involved in dehydration-responsive network: a proteomic approach.┬аJ. Proteome Res.┬а9: 3443-3464
Choudhary, M.K., Basu, D., Datta, A.,┬аChakraborty, N.┬аand Chakraborty, S. (2009) Dehydration-responsive nuclear proteome of rice (Oryza sativa┬аL.) illustrates protein network, novel regulators of cellular adaptation and evolutionary perspect.┬аMol. Cell. Proteomics┬а8: 1579-1598
Ashraf, N., Ghai, D., Barman, P., Basu, S., Gangisetty, N., Mandal, M.K.,┬аChakraborty, N., Datta A and Chakraborty, S. (2009) Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrates predicted and unexpected genes and novel regulators of plant immunity.┬аBMC Genomics┬а10: 415.
Pandey, A., Chakraborty, S. and Datta, A. and┬аChakraborty, N.┬а(2008) Proteomics approach to identify dehydration responsive nuclear proteins from chickpea (Cicer arietinum┬аL.).┬аMol. Cell. Proteomics7: 88-107
Agrawal, L., Chakraborty, S., Jaiswal, D.K., Gupta, S., Datta, A. and┬аChakraborty, N.┬а(2008) Comparative proteomics of tuber induction, development and maturation reveal the complexity of tuberization process in potato (Solanum tuberosum┬аL.)┬аJ. Proteome Res.┬а7: 3803-3817
Bhushan, D., Pandey A, Choudhary MK, Datta A, Chakraborty, S. and┬аChakraborty, N.┬а(2007) Comparative proteomics analysis of differentially expressed proteins in chickpea extracellular matrix during dehydration stress.┬аMol. Cell. Proteomics┬а6: 1868-1884
Chakraborty, N., Ohta, M.O. and Zhu, J.K. (2007) Recognition of a PP2C interaction motif in several plant protein kinases. Methods┬аMol. Biol.┬а365: 287-298
Pandey, A., Choudhary, M.K., Bhushan, D., Chattopadhyay, A., Chakraborty, S., Datta, A. and┬аChakraborty, N.┬а(2006) The nuclear proteome of chickpea (Cicer arietinum┬аL.) reveals predicted and unexpected proteins.┬аJ. Proteome Res.┬а5: 3301-3311
Bhushan, D., Pandey, A., Chattopadhyay, A., Choudhary, M.K., Chakraborty, S., Datta, A. and┬аChakraborty, N.┬а(2006) Extracellular matrix proteome of chickpea (Cicer arietinum) illustrates pathway abundance, novel protein functions and evolutionary perspect.┬аJ. Proteome Res.┬а5: 1711-1720
Chakraborty, S.,┬аChakraborty, N., Jain, D., Salunke, D.M. and Datta, A. (2002) Active site geometry of oxalate decarboxylase from┬аFlammulina velutipes: Role of histidine coordinated manganese in substrate recognition.┬аProtein Sci.┬а11: 2138-2147
Chakraborty, S., Sarmah, B.,┬аChakraborty, N.┬аand Datta, A. (2002) Premature termination of RNA polymerase II mediated transcription of a seed protein gene in┬аSchizosaccharomyces pombe.┬аNuclei Acids Res.30: 2940-2949
Sarmah, B.,┬аChakraborty, N., Chakraborty, S. and Datta, A. (2002) Plant pre-Mrna splicing in fission yeast,┬аSchizosaccharomyces pombe.┬аBiochem. Biophy. Res. Commn.┬а293: 1209-1216
Chakarborty, S., Chakarborty, N. and Datta, A. (2000) Increased nutritive value of transgenic potato by expressing a nonallergenic seed albumin gene from┬аAmaranthus hypochondriacus.┬аProc. Natl. Acad. Sci.┬аUSA97: 3724-3729
Chakraborty, N.┬аand Tripathy, B.C. (1992) Involvement of singlet oxygen in 5-aminolevulinic acid induced photodynamic damage of cucumber (Cucumis sativus┬аL.) chloroplasts.┬аPlant Physiol.┬а98: 7-11
Chakraborty, N.┬аand Tripathy, B.C. (1992) 5-aminolevulinic acid induced photodynamic reaction in thylakoid membranes of cucumber (Cucumis sativus┬аL.) chloroplasts.┬аJ. Plant Biochem. Biotechnol.┬а1: 65-68
Tripathy, B.C. and┬аChakraborty, N.┬а(1991) 5-aminolevulinic acid induced photodynamic damage to the photosynthetic electron transport chain of cucumber (Cucumis sativus┬аL.) cotyledons.┬аPlant Physiol.┬а96: 761-767
Chakraborty, N.┬аand Tripathy, B.C. (1990) Expression of 5-aminolevulinic acid induced damage to the thylakoid membrane in dark by brief pre-illumination.┬аJ. Biosci.┬а15: 199-204
Book Chapter
Mishra D, Shekhar S, Singh D, Chakraborty S and┬аChakraborty N┬а(2018). Heat shock proteins and abiotic stress tolerance in plants. In┬аRegulation of heat shock protein responses. Eds. A. Asea and P. Kaur, Springer, Cham, Switzerland, pp. 41-69
Pandey A, Chakraborty S and┬аChakraborty N┬а(2018). Nuclear proteome: isolation of intact nuclei, extraction of nuclear proteins, and 2-DE analysis. In┬аPlant Membrane Proteomics.┬аEds. H. Mock, A. Matros and K. Witzel, Humana Press, New York, pp. 41-55
Barua P, Gayen D, Lande NV, Chakraborty S and┬аChakraborty N┬а(2017). Global proteomic profiling and identification of stress-responsive proteins using two-dimensional gel electrophoresis. In┬аPlant Stress Tolerance.┬аEds. R. Sunkar, Humana Press, New York, NY, pp. 163-179
Narula K, Sinha A, Haider T,┬аChakraborty N┬аand Chakraborty S (2016) Seed Proteomics: An Overview. In┬аAgricultural Proteomics.┬аEd. G. Salekdeh, Springer, Cham, Switzerland, pp. 31-52
Chakraborty S, Pandey A, Datta A and┬аChakraborty N┬а(2008) Nucleus. In┬аPlant proteomics: technology, strategies, and applications.Eds.G.K. Agrawal and R. Rakwal, John Wiley & Sons, Inc., pp. 327-338
Chakraborty N, Chakraborty S and Datta A (2005) Nutritional genomics: commitment to society. In┬аBiodiversity: status and prospects.┬аEds. P. Tandon, M. Sharma and R. Swarup, Narosa Publishing House, New Delhi, pp. 35-42
Chakraborty N, Chakraborty S and Datta A (2005) Designer GM potato with increased nutritive value. In┬аGlimpses of the work on environment and development in India.┬аEds. J.S. Singh and V.P. Sharma. Angkor Publishers, New Delhi, pp. 269-272
Chakraborty N, Chakraborty S, Kesarwani M, Mohammad A and Datta A (1998) Increased nutritive and qualitative value of transgenic plants expressing genes specifying amaranth seed albumin and┬аCollybia┬аoxalate decarboxylase. In┬аFrontiers in biology: the challenges of biodiversity biotechnology.┬аEd. K.T. Shao. Academia Sinica, Taipei, pp. 125-131
Mehta A, Natarajan K, Raina A, Biswas S,┬аChakraborty N┬аand Datta A (1997) Molecular analysis of genes encoding┬аAmaranthus┬аseed specific protein and┬аCollybia┬аoxalate decarboxylase to develop transgenic plants. In┬аPlant molecular biology and biotechnology.┬аEds. K.K. Tiwari and G.S. Singhal. Narosa Publishing House, New Delhi, pp. 321-326
Patents (National AND International)
US Patents
Chakraborty S,┬аChakraborty N, Datta A, Asraf N, Basu S, Nag P, and Singh M (2015) Polynucleotides derived from chickpea and uses thereof (US Patent No. 9,163,255)
Datta A, Chakraborty S,┬аChakraborty N, Meli V and Ghosh S (2015) Polynucleotide sequence of fruit softening associated B-D-N-acetylhexosaminidase and its uses for enhancing fruit shelf life (US Patent No. 8,987,556)
Datta A, Chakraborty S,┬аChakraborty N, Meli V and Ghosh S (2015) Polynucleotide sequence of fruit softening associated ╬▒-mannosidase and its uses for enhancing fruit shelf life (US Patent No. 8,962,918).
Chakraborty N, Chakraborty S, Datta A, Wardhan V and Jahan K (2015) Polynucleotide encoding CaTLP1 protein and uses thereof. (US No.14/399,706). Published by USPTO on 07/05/2015 (US20150128305 A1)
Chakraborty N, Chakraborty S, Jaiswal, D.K., Mishra, P., Subba, P. and Rathi, D. (2018) Method of producing stress tolerant plants overexpressing CaSUN1 (US Patent No. 9,944,943 B2).
Chakraborty N, Chakraborty S, Verma JK, Gayali S, Dass S and Kumar A (2015) Method of producing stress tolerant plants overexpressing OsAlba1. (US No. 20,150,247,161). Published by USPTO on 03/09/2015 (US20150247161 A1).
Chakraborty N, Chakraborty S, Datta A and Bhushan D (2012) Extracellular matrix localized ferritin-1 for iron uptake, storage, and stress tolerance (US Patent No. 8,163,977)
US Patents
Chakraborty S,┬аChakraborty N, Datta A, Asraf N, Basu S, Nag P and Singh M (2017) Polynucleotides derived from chickpea and uses thereof for improving immunity to fungal pathogens (CP No. 2,772,654)
Chakraborty S,┬аChakraborty N, Datta A, Ashraf N, Basu S, Nag P and Singh M (2016) Polynucleotides derived from chickpea and uses thereof (EP No. 2470663)
Chakraborty S,┬аChakraborty N, Datta A, Asraf N, Basu S, Nag P and Singh M (2016) Polynucleotides derived from chickpea and uses thereof (APA No. 2010288112)
Datta, A., Chakraborty, S.,┬аChakraborty N, Ghosh, S., and Meli, S.V. (2016) Polynucleotide sequence of fruit softening associated ╬▒-mannosidase and its uses for enhancing fruit shelf life (JP 6017784B2)
Datta, A.,┬аChakraborty N, Chakraborty, S., Ghosh, S., Meli, V. (2016) Polynucleotide sequence of fruit softening associated B-D-N-acetylhexosaminidase and its uses for enhancing fruit shelf life (AU 2009269534)
Chakraborty N, Chakraborty, S., Wardhan, V., Rathi, D., Gupta. S. (2015). Method of generating stress tolerant plant over-expressing CaRRP1, reagents and uses thereof [PCT/IN2016/050437] [Pub. No. WO2017098530 A1]
Datta, A., Chakraborty, S.,┬аChakraborty N, Meli, S.V., and Ghosh, S.┬а (2015) Polynucleotide sequence of fruit softening associated ╬▓-D-N-acetyhexosaminidase and its uses for enhancing fruit shelf life (JP 5836802B2)
Datta A, Chakraborty S,┬аChakraborty N, Ghosh S and Meli SV (2015) Polynucleotide sequence of fruit softening associated ╬▒-mannosidase and its uses for enhancing fruit shelf life (EP 2315835)
Datta, A., Chakraborty, S.,┬аChakraborty N, Ghosh, S., Meli, V. (2014) Polynucleotide sequence of fruit softening associated B-D-N-acetylhexosaminidase and its uses for enhancing fruit shelf life (CA 2726292)
Datta A, Chakraborty S,┬аChakraborty N, Ghosh S and Meli SV (2014) Polynucleotide sequence of fruit softening associated ╬▒-mannosidase and its uses for enhancing fruit shelf life (AU 2009269533 B2)
Datta A, Chakraborty S, Chakraborty N, Ghosh S and Meli SV (2014) Polynucleotide sequence of fruit softening associated ╬▒-mannosidase and its uses for enhancing fruit shelf life (CA 2726282 A1)
Datta A, Chakraborty S,┬аChakraborty N┬аand Meli V (2014) Polynucleotide sequence of fruit softening associated B-D-N-acetylhexosaminidase and its uses for enhancing fruit shelf life (EP-2315830)
Chakraborty N, Chakraborty S, Datta A, Wardhan V and Jahan K (2012) Polynucleotide encoding CaTLP1 and uses thereof. (PCT/IN2013/000302). Published by WIPO on 14/11/2013 (Pub. No. WO2013168181 A1)
Datta A, Chakraborty S,┬аChakraborty N, Ghosh S and Meli SV (2010) Polynucleotide sequence of fruit softening associated ╬▒-mannosidase and its uses for enhancing fruit shelf life (PCT/IN2009/000387). Published by WIPO on 14/01.2010 (Pub. No. WO 2010004582)
Chakraborty N, Chakraborty S, Datta A and Bhushan D (2008) Extracellular matrix localized ferritin-1 for iron uptake, storage, and stress tolerance (PCT/IN2007/000231). Published by WIPO on 29.05.2008 (Pub. No. WO 2007141808 A3)
Chakraborty S,┬аChakraborty N, Datta A, Asraf N, Basu S, Nag P and Singh M (2011) Polynucleotides derived from chickpea and uses thereof (WO2011024207A3)
Datta, A., Chakraborty, S.,┬аChakraborty N, Ghosh, S., and Meli, S.V. (2010) Polynucleotide sequence of fruit softening associated ╬▒-mannosidase and its uses for enhancing fruit shelf life (WO 2010004582A1).
Datta, A., Chakraborty S,┬аChakraborty N, Meli, S.V., and Ghosh, S.┬а (2010) Polynucleotide sequence of fruit softening associated ╬▓-D-N-acetyhexosaminidase and its uses for enhancing fruit shelf life (WO 2010004583A2)
INDIAN Patents
Chakraborty N, Chakraborty S, Wardhan V, Rathi D, Gupta S (2015) Method of generating stress tolerant plant over-expressing CaRRP1, reagents and uses thereof [IPA No.3983/DEL/2015].
Chakraborty N, Chakraborty S, Verma JK, Dass S, Gayali S, Kumar A and Praveen S (2014) A method of producing stress tolerant plants over-expressing OsAlba1 [IPA No. 3759/DEL/2013]
Datta A,┬аChakraborty N, Chakraborty S, Kamthan M and Kamthan A (2014) Polynucleotide Associated with Ergosterol Biosynthesis and uses thereof [IPA-925/DEL/2014]
Chakraborty N, Chakraborty S, Jaiswal DK, Mishra P, Subba P and Rathi D (2014) A method of producing stress tolerant plants (IPA No. 8/DEL/2014)
Chakraborty N, Chakraborty S, Verma JK, Gayali S, Dass S and Kumar A (2013) A method of producing stress tolerance rice plants (IPA No. 3759/DEL/2013)
Chakraborty N, Chakraborty S, Datta A, Wardhan V and Jahan K (2012) Polynucleotide encoding CaTLP1 and uses thereof [IPA No.1406/DEL/2012]
Datta A, Chakraborty S,┬аChakraborty N, Kamthan M and Kamthan A (2012) Polynucleotide sequence of an ergosterol biosynthesis enzyme тИЖ7-sterol-C-5-desaturase and uses thereof [IPA No. 3671/DEL/2012]
Datta A, Chakraborty S,┬аChakraborty N, Ghosh S and Meli SV (2010) Polynucleotide sequence of fruit softening associated ╬▒-mannosidase and its uses for enhancing fruit shelf life [IPA No.1647/DEL/2008]. Published by Indian Patent Office on 16.04.2010
Chakraborty S, Datta A,┬аChakraborty N, Ashraf N and Basu S (2009) Functional genomics and stress responsive polynucleotides from chickpea [IPA No.1565/DEL/2009]
Datta A, Chakraborty S,┬аChakraborty N, Ghosh, S. and Meli, S.V. (2010) Polynucleotide sequence of fruit softening associated ╬▓-D-N-acetyhexosaminidase and its uses for enhancing fruit shelf life [IPA No.1648/DEL/2008]. Published by Indian Patent Office on 23.04.2010
Chakraborty N, Chakraborty, S., Datta, A. and Bhushan, D. (2006) Extracellular matrix localized ferritin-1 for iron uptake, storage, and stress tolerance [IPA No.1371/DEL/2006]